The neural substrates of childhood anxiety remain understudied. Prior work in both adults and children has suggested that disruptions in white matter – the fatty sheaths of myelin that coat axons in the brain and facilitate communication among neurons – may contribute to the pathophysiology of several psychiatric disorders, including anxiety disorders. The current study, in the largest sample to date, uses neuroimaging to characterize changes in white matter in children with anxiety disorders and finds that boys with anxiety disorders show widespread reductions in white matter integrity, including in important bundles of white matter connecting frontal regulatory brain regions (like the prefrontal cortex) to limbic structures involved in emotion processing (like the amygdala). Critically, this relationship appears sex-specific, as girls with anxiety disorders do not show such differences.